42-Issue 3
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Item Unfolding Edges: Adding Context to Edges in Multivariate Graph Visualization(The Eurographics Association and John Wiley & Sons Ltd., 2023) Bludau, Mark-Jan; Dörk, Marian; Tominski, Christian; Bujack, Roxana; Archambault, Daniel; Schreck, TobiasExisting work on visualizing multivariate graphs is primarily concerned with representing the attributes of nodes. Even though edges are the constitutive elements of networks, there have been only few attempts to visualize attributes of edges. In this work, we focus on the critical importance of edge attributes for interpreting network visualizations and building trust in the underlying data. We propose 'unfolding of edges' as an interactive approach to integrate multivariate edge attributes dynamically into existing node-link diagrams. Unfolding edges is an in-situ approach that gradually transforms basic links into detailed representations of the associated edge attributes. This approach extends focus+context, semantic zoom, and animated transitions for network visualizations to accommodate edge details on-demand without cluttering the overall graph layout. We explore the design space for the unfolding of edges, which covers aspects of making space for the unfolding, of actually representing the edge context, and of navigating between edges. To demonstrate the utility of our approach, we present two case studies in the context of historical network analysis and computational social science. For these, web-based prototypes were implemented based on which we conducted interviews with domain experts. The experts' feedback suggests that the proposed unfolding of edges is a useful tool for exploring rich edge information of multivariate graphs.Item GO-Compass: Visual Navigation of Multiple Lists of GO terms(The Eurographics Association and John Wiley & Sons Ltd., 2023) Harbig, Theresa; Witte Paz, Mathias; Nieselt, Kay; Bujack, Roxana; Archambault, Daniel; Schreck, TobiasAnalysis pipelines in genomics, transcriptomics, and proteomics commonly produce lists of genes, e.g., differentially expressed genes. Often these lists overlap only partly or not at all and contain too many genes for manual comparison. However, using background knowledge, such as the functional annotations of the genes, the lists can be abstracted to functional terms. One approach is to run Gene Ontology (GO) enrichment analyses to determine over- and/or underrepresented functions for every list of genes. Due to the hierarchical structure of the Gene Ontology, lists of enriched GO terms can contain many closely related terms, rendering the lists still long, redundant, and difficult to interpret for researchers. In this paper, we present GO-Compass (Gene Ontology list comparison using Semantic Similarity), a visual analytics tool for the dispensability reduction and visual comparison of lists of GO terms. For dispensability reduction, we adapted the REVIGO algorithm, a summarization method based on the semantic similarity of GO terms, to perform hierarchical dispensability clustering on multiple lists. In an interactive dashboard, GO-Compass offers several visualizations for the comparison and improved interpretability of GO terms lists. The hierarchical dispensability clustering is visualized as a tree, where users can interactively filter out dispensable GO terms and create flat clusters by cutting the tree at a chosen dispensability. The flat clusters are visualized in animated treemaps and are compared using a correlation heatmap, UpSet plots, and bar charts. With two use cases on published datasets from different omics domains, we demonstrate the general applicability and effectiveness of our approach. In the first use case, we show how the tool can be used to compare lists of differentially expressed genes from a transcriptomics pipeline and incorporate gene information into the analysis. In the second use case using genomics data, we show how GO-Compass facilitates the analysis of many hundreds of GO terms. For qualitative evaluation of the tool, we conducted feedback sessions with five domain experts and received positive comments. GO-Compass is part of the Tue- Vis Visualization Server as a web application available at https://go-compass-tuevis.cs.uni-tuebingen.de/Item Teru Teru Bozu: Defensive Raincloud Plots(The Eurographics Association and John Wiley & Sons Ltd., 2023) Correll, Michael; Bujack, Roxana; Archambault, Daniel; Schreck, TobiasUnivariate visualizations like histograms, rug plots, or box plots provide concise visual summaries of distributions. However, each individual visualization may fail to robustly distinguish important features of a distribution, or provide sufficient information for all of the relevant tasks involved in summarizing univariate data. One solution is to juxtapose or superimpose multiple univariate visualizations in the same chart, as in Allen et al.'s [APW*19] ''raincloud plots.'' In this paper I examine the design space of raincloud plots, and, through a series of simulation studies, explore designs where the component visualizations mutually ''defend'' against situations where important distribution features are missed or trivial features are given undue prominence. I suggest a class of ''defensive'' raincloud plot designs that provide good mutual coverage for surfacing distributional features of interest.Item Process and Pitfalls of Online Teaching and Learning with Design Study ''Lite'' Methodology: A Retrospective Analysis(The Eurographics Association and John Wiley & Sons Ltd., 2023) Syeda, Uzma Haque; Dunne, Cody; Borkin, Michelle A.; Bujack, Roxana; Archambault, Daniel; Schreck, TobiasDesign studies are an integral method of visualization research with hundreds of instances in the literature. Although taught as a theory, the practical implementation of design studies is often excluded from visualization pedagogy due to the lengthy time commitments associated with such studies. Recent research has addressed this challenge and developed an expedited design study framework, the Design Study ''Lite'' Methodology (DSLM), which can implement design studies with novice students within just 14 weeks. The framework was developed and evaluated based on five semesters of in-person data visualization courses with 30 students or less and was implemented in conjunction with Service-Learning (S-L).With the growth and popularity of the data visualization field-and the teaching environment created by the COVID-19 pandemic-more academic institutions are offering visualization courses online. Therefore, in this paper, we strengthen and validate the epistemological foundations of the DSLM framework by testing its (1) adaptability to online learning environments and conditions and (2) scalability to larger classes with up to 57 students. We present two online implementations of the DSLM framework, with and without Service-Learning (S-L), to test the adaptability and scalability of the framework. We further demonstrate that the framework can be applied effectively without the S-L component. We reflect on our experience with the online DSLM implementations and contribute a detailed retrospective analysis using thematic analysis and grounded theory methods to draw valuable recommendations and guidelines for future applications of the framework. This work verifies that DSLM can be used successfully in online classes to teach design study methodology. Finally, we contribute novel additions to the DSLM framework to further enhance it for teaching and learning design studies in the classroom.Item Visual Analytics on Network Forgetting for Task-Incremental Learning(The Eurographics Association and John Wiley & Sons Ltd., 2023) Li, Ziwei; Xu, Jiayi; Chao, Wei-Lun; Shen, Han-Wei; Bujack, Roxana; Archambault, Daniel; Schreck, TobiasTask-incremental learning (Task-IL) aims to enable an intelligent agent to continuously accumulate knowledge from new learning tasks without catastrophically forgetting what it has learned in the past. It has drawn increasing attention in recent years, with many algorithms being proposed to mitigate neural network forgetting. However, none of the existing strategies is able to completely eliminate the issues. Moreover, explaining and fully understanding what knowledge and how it is being forgotten during the incremental learning process still remains under-explored. In this paper, we propose KnowledgeDrift, a visual analytics framework, to interpret the network forgetting with three objectives: (1) to identify when the network fails to memorize the past knowledge, (2) to visualize what information has been forgotten, and (3) to diagnose how knowledge attained in the new model interferes with the one learned in the past. Our analytical framework first identifies the occurrence of forgetting by tracking the task performance under the incremental learning process and then provides in-depth inspections of drifted information via various levels of data granularity. KnowledgeDrift allows analysts and model developers to enhance their understanding of network forgetting and compare the performance of different incremental learning algorithms. Three case studies are conducted in the paper to further provide insights and guidance for users to effectively diagnose catastrophic forgetting over time.Item Human-Computer Collaboration for Visual Analytics: an Agent-based Framework(The Eurographics Association and John Wiley & Sons Ltd., 2023) Monadjemi, Shayan; Guo, Mengtian; Gotz, David; Garnett, Roman; Ottley, Alvitta; Bujack, Roxana; Archambault, Daniel; Schreck, TobiasThe visual analytics community has long aimed to understand users better and assist them in their analytic endeavors. As a result, numerous conceptual models of visual analytics aim to formalize common workflows, techniques, and goals leveraged by analysts. While many of the existing approaches are rich in detail, they each are specific to a particular aspect of the visual analytic process. Furthermore, with an ever-expanding array of novel artificial intelligence techniques and advances in visual analytic settings, existing conceptual models may not provide enough expressivity to bridge the two fields. In this work, we propose an agent-based conceptual model for the visual analytic process by drawing parallels from the artificial intelligence literature. We present three examples from the visual analytics literature as case studies and examine them in detail using our framework. Our simple yet robust framework unifies the visual analytic pipeline to enable researchers and practitioners to reason about scenarios that are becoming increasingly prominent in the field, namely mixed-initiative, guided, and collaborative analysis. Furthermore, it will allow us to characterize analysts, visual analytic settings, and guidance from the lenses of human agents, environments, and artificial agents, respectively.Item Evaluating View Management for Situated Visualization in Web-based Handheld AR(The Eurographics Association and John Wiley & Sons Ltd., 2023) Batch, Andrea; Shin, Sungbok; Liu, Julia; Butcher, Peter W. S.; Ritsos, Panagiotis D.; Elmqvist, Niklas; Bujack, Roxana; Archambault, Daniel; Schreck, TobiasAs visualization makes the leap to mobile and situated settings, where data is increasingly integrated with the physical world using mixed reality, there is a corresponding need for effectively managing the immersed user's view of situated visualizations. In this paper we present an analysis of view management techniques for situated 3D visualizations in handheld augmented reality: a shadowbox, a world-in-miniature metaphor, and an interactive tour. We validate these view management solutions through a concrete implementation of all techniques within a situated visualization framework built using a web-based augmented reality visualization toolkit, and present results from a user study in augmented reality accessed using handheld mobile devices.Item EuroVis 2023 CGF 42-3: Frontmatter(The Eurographics Association and John Wiley & Sons Ltd., 2023) Bujack, Roxana; Archambault, Daniel; Schreck, Tobias; Bujack, Roxana; Archambault, Daniel; Schreck, TobiasItem Doom or Deliciousness: Challenges and Opportunities for Visualization in the Age of Generative Models(The Eurographics Association and John Wiley & Sons Ltd., 2023) Schetinger, Victor; Bartolomeo, Sara Di; El-Assady, Mennatallah; McNutt, Andrew; Miller, Matthias; Passos, João Paulo Apolinário; Adams, Jane L.; Bujack, Roxana; Archambault, Daniel; Schreck, TobiasGenerative text-to-image models (as exemplified by DALL-E, MidJourney, and Stable Diffusion) have recently made enormous technological leaps, demonstrating impressive results in many graphical domains-from logo design to digital painting to photographic composition. However, the quality of these results has led to existential crises in some fields of art, leading to questions about the role of human agency in the production of meaning in a graphical context. Such issues are central to visualization, and while these generative models have yet to be widely applied in visualization, it seems only a matter of time until their integration is manifest. Seeking to circumvent similar ponderous dilemmas, we attempt to understand the roles that generative models might play across visualization.We do so by constructing a framework that characterizes what these technologies offer at various stages of the visualization workflow, augmented and analyzed through semi-structured interviews with 21 experts from related domains. Through this work, we map the space of opportunities and risks that might arise in this intersection, identifying doomsday prophecies and delicious low-hanging fruits that are ripe for research.Item visMOP - A Visual Analytics Approach for Multi-omics Pathways(The Eurographics Association and John Wiley & Sons Ltd., 2023) Brich, Nicolas; Schacherer, Nadine; Hoene, Miriam; Weigert, Cora; Lehmann, Rainer; Krone, Michael; Bujack, Roxana; Archambault, Daniel; Schreck, TobiasWe present an approach for the visual analysis of multi-omics data obtained using high-throughput methods. The term ''omics'' denotes measurements of different types of biologically relevant molecules, like the products of gene transcription (transcriptomics) or the abundance of proteins (proteomics). Current popular visualization approaches often only support analyzing each of these omics separately. This, however, disregards the interconnectedness of different biologically relevant molecules and processes. Consequently, it describes the actual events in the organism suboptimally or only partially. Our visual analytics approach for multi-omics data provides a comprehensive overview and details-on-demand by integrating the different omics types in multiple linked views. To give an overview, we map the measurements to known biological pathways and use a combination of a clustered network visualization, glyphs, and interactive filtering. To ensure the effectiveness and utility of our approach, we designed it in close collaboration with domain experts and assessed it using an exemplary workflow with real-world transcriptomics, proteomics, and lipidomics measurements from mice.Item Belief Decay or Persistence? A Mixed-method Study on Belief Movement Over Time(The Eurographics Association and John Wiley & Sons Ltd., 2023) Gupta, Shrey; Karduni, Alireza; Wall, Emily; Bujack, Roxana; Archambault, Daniel; Schreck, TobiasWhen individuals encounter new information (data), that information is incorporated with their existing beliefs (prior) to form a new belief (posterior) in a process referred to as belief updating. While most studies on rational belief updating in visual data analysis elicit beliefs immediately after data is shown, we posit that there may be critical movement in an individual's beliefs when elicited immediately after data is shown v. after a temporal delay (e.g., due to forgetfulness or weak incorporation of the data). Our paper investigates the hypothesis that posterior beliefs elicited after a time interval will ''decay'' back towards the prior beliefs compared to the posterior beliefs elicited immediately after new data is presented. In this study, we recruit 101 participants to complete three tasks where beliefs are elicited immediately after seeing new data and again after a brief distractor task. We conduct (1) a quantitative analysis of the results to understand if there are any systematic differences in beliefs elicited immediately after seeing new data or after a distractor task and (2) a qualitative analysis of participants' reflections on the reasons for their belief update. While we find no statistically significant global trends across the participants beliefs elicited immediately v. after the delay, the qualitative analysis provides rich insight into the reasons for an individual's belief movement across 9 prototypical scenarios, which includes (i) decay of beliefs as a result of either forgetting the information shown or strongly held prior beliefs, (ii) strengthening of confidence in updated beliefs by positively integrating the new data and (iii) maintaining a consistently updated belief over time, among others. These results can guide subsequent experiments to disambiguate when and by what mechanism new data is truly incorporated into one's belief system.Item RectEuler: Visualizing Intersecting Sets using Rectangles(The Eurographics Association and John Wiley & Sons Ltd., 2023) Paetzold, Patrick; Kehlbeck, Rebecca; Strobelt, Hendrik; Xue, Yumeng; Storandt, Sabine; Deussen, Oliver; Bujack, Roxana; Archambault, Daniel; Schreck, TobiasEuler diagrams are a popular technique to visualize set-typed data. However, creating diagrams using simple shapes remains a challenging problem for many complex, real-life datasets. To solve this, we propose RectEuler: a flexible, fully-automatic method using rectangles to create Euler-like diagrams. We use an efficient mixed-integer optimization scheme to place set labels and element representatives (e.g., text or images) in conjunction with rectangles describing the sets. By defining appropriate constraints, we adhere to well-formedness properties and aesthetic considerations. If a dataset cannot be created within a reasonable time or at all, we iteratively split the diagram into multiple components until a drawable solution is found. Redundant encoding of the set membership using dots and set lines improves the readability of the diagram. Our web tool lets users see how the layout changes throughout the optimization process and provides interactive explanations. For evaluation, we perform quantitative and qualitative analysis across different datasets and compare our method to state-of-the-art Euler diagram generation methods.Item ParaDime: A Framework for Parametric Dimensionality Reduction(The Eurographics Association and John Wiley & Sons Ltd., 2023) Hinterreiter, Andreas; Humer, Christina; Kainz, Bernhard; Streit, Marc; Bujack, Roxana; Archambault, Daniel; Schreck, TobiasParaDime is a framework for parametric dimensionality reduction (DR). In parametric DR, neural networks are trained to embed high-dimensional data items in a low-dimensional space while minimizing an objective function. ParaDime builds on the idea that the objective functions of several modern DR techniques result from transformed inter-item relationships. It provides a common interface for specifying these relations and transformations and for defining how they are used within the losses that govern the training process. Through this interface, ParaDime unifies parametric versions of DR techniques such as metric MDS, t-SNE, and UMAP. It allows users to fully customize all aspects of the DR process.We show how this ease of customization makes ParaDime suitable for experimenting with interesting techniques such as hybrid classification/embedding models and supervised DR. This way, ParaDime opens up new possibilities for visualizing high-dimensional data.Item DASS Good: Explainable Data Mining of Spatial Cohort Data(The Eurographics Association and John Wiley & Sons Ltd., 2023) Wentzel, Andrew; Floricel, Carla; Canahuate, Guadalupe; Naser, Mohamed A.; Mohamed, Abdallah S.; Fuller, Clifton David; Dijk, Lisanne van; Marai, G. Elisabeta; Bujack, Roxana; Archambault, Daniel; Schreck, TobiasDeveloping applicable clinical machine learning models is a difficult task when the data includes spatial information, for example, radiation dose distributions across adjacent organs at risk. We describe the co-design of a modeling system, DASS, to support the hybrid human-machine development and validation of predictive models for estimating long-term toxicities related to radiotherapy doses in head and neck cancer patients. Developed in collaboration with domain experts in oncology and data mining, DASS incorporates human-in-the-loop visual steering, spatial data, and explainable AI to augment domain knowledge with automatic data mining. We demonstrate DASS with the development of two practical clinical stratification models and report feedback from domain experts. Finally, we describe the design lessons learned from this collaborative experience.Item Been There, Seen That: Visualization of Movement and 3D Eye Tracking Data from Real-World Environments(The Eurographics Association and John Wiley & Sons Ltd., 2023) Pathmanathan, Nelusa; Öney, Seyda; Becher, Michael; Sedlmair, Michael; Weiskopf, Daniel; Kurzhals, Kuno; Bujack, Roxana; Archambault, Daniel; Schreck, TobiasThe distribution of visual attention can be evaluated using eye tracking, providing valuable insights into usability issues and interaction patterns. However, when used in real, augmented, and collaborative environments, new challenges arise that go beyond desktop scenarios and purely virtual environments. Toward addressing these challenges, we present a visualization technique that provides complementary views on the movement and eye tracking data recorded from multiple people in realworld environments. Our method is based on a space-time cube visualization and a linked 3D replay of recorded data. We showcase our approach with an experiment that examines how people investigate an artwork collection. The visualization provides insights into how people moved and inspected individual pictures in their spatial context over time. In contrast to existing methods, this analysis is possible for multiple participants without extensive annotation of areas of interest. Our technique was evaluated with a think-aloud experiment to investigate analysis strategies and an interview with domain experts to examine the applicability in other research fields.Item Data Stories of Water: Studying the Communicative Role of Data Visualizations within Long-form Journalism(The Eurographics Association and John Wiley & Sons Ltd., 2023) Garreton, Manuela; Morini, Francesca; Moyano, Daniela Paz; Grün, Gianna-Carina; Parra, Denis; Dörk, Marian; Bujack, Roxana; Archambault, Daniel; Schreck, TobiasWe present a methodology for making sense of the communicative role of data visualizations in journalistic storytelling and share findings from surveying water-related data stories. Data stories are a genre of long-form journalism that integrate text, data visualization, and other visual expressions (e.g., photographs, illustrations, videos) for the purpose of data-driven storytelling. In the last decade, a considerable number of data stories about a wide range of topics have been published worldwide. Authors use a variety of techniques to make complex phenomena comprehensible and use visualizations as communicative devices that shape the understanding of a given topic. Despite the popularity of data stories, we, as scholars, still lack a methodological framework for assessing the communicative role of visualizations in data stories. To this extent, we draw from data journalism, visual culture, and multimodality studies to propose an interpretative framework in six stages. The process begins with the analysis of content blocks and framing elements and ends with the identification of dimensions, patterns, and relationships between textual and visual elements. The framework is put to the test by analyzing 17 data stories about water-related issues. Our observations from the survey illustrate how data visualizations can shape the framing of complex topics.Item Do Disease Stories need a Hero? Effects of Human Protagonists on a Narrative Visualization about Cerebral Small Vessel Disease(The Eurographics Association and John Wiley & Sons Ltd., 2023) Mittenentzwei, Sarah; Weiß, Veronika; Schreiber, Stefanie; Garrison, Laura A.; Bruckner, Stefan; Pfister, Malte; Preim, Bernhard; Meuschke, Monique; Bujack, Roxana; Archambault, Daniel; Schreck, TobiasAuthors use various media formats to convey disease information to a broad audience, from articles and videos to interviews or documentaries. These media often include human characters, such as patients or treating physicians, who are involved with the disease. While artistic media, such as hand-crafted illustrations and animations are used for health communication in many cases, our goal is to focus on data-driven visualizations. Over the last decade, narrative visualization has experienced increasing prominence, employing storytelling techniques to present data in an understandable way. Similar to classic storytelling formats, narrative medical visualizations may also take a human character-centered design approach. However, the impact of this form of data communication on the user is largely unexplored. This study investigates the protagonist's influence on user experience in terms of engagement, identification, self-referencing, emotional response, perceived credibility, and time spent in the story. Our experimental setup utilizes a character-driven story structure for disease stories derived from Joseph Campbell's Hero's Journey. Using this structure, we generated three conditions for a cerebral small vessel disease story that vary by their protagonist: (1) a patient, (2) a physician, and (3) a base condition with no human protagonist. These story variants formed the basis for our hypotheses on the effect of a human protagonist in disease stories, which we evaluated in an online study with 30 participants. Our findings indicate that a human protagonist exerts various influences on the story perception and that these also vary depending on the type of protagonist.Item A Comparative Evaluation of Visual Summarization Techniques for Event Sequences(The Eurographics Association and John Wiley & Sons Ltd., 2023) Zinat, Kazi Tasnim; Yang, Jinhua; Gandhi, Arjun; Mitra, Nistha; Liu, Zhicheng; Bujack, Roxana; Archambault, Daniel; Schreck, TobiasReal-world event sequences are often complex and heterogeneous, making it difficult to create meaningful visualizations using simple data aggregation and visual encoding techniques. Consequently, visualization researchers have developed numerous visual summarization techniques to generate concise overviews of sequential data. These techniques vary widely in terms of summary structures and contents, and currently there is a knowledge gap in understanding the effectiveness of these techniques. In this work, we present the design and results of an insight-based crowdsourcing experiment evaluating three existing visual summarization techniques: CoreFlow, SentenTree, and Sequence Synopsis. We compare the visual summaries generated by these techniques across three tasks, on six datasets, at six levels of granularity. We analyze the effects of these variables on summary quality as rated by participants and completion time of the experiment tasks. Our analysis shows that Sequence Synopsis produces the highest-quality visual summaries for all three tasks, but understanding Sequence Synopsis results also takes the longest time. We also find that the participants evaluate visual summary quality based on two aspects: content and interpretability. We discuss the implications of our findings on developing and evaluating new visual summarization techniques.Item Exploring Interpersonal Relationships in Historical Voting Records(The Eurographics Association and John Wiley & Sons Ltd., 2023) Cantareira, Gabriel Dias; Xing, Yiwen; Cole, Nicholas; Borgo, Rita; Abdul-Rahman, Alfie; Bujack, Roxana; Archambault, Daniel; Schreck, TobiasHistorical records from democratic processes and negotiation of constitutional texts are a complex type of data to navigate due to the many different elements that are constantly interacting with one another: people, timelines, different proposed documents, changes to such documents, and voting to approve or reject those changes. In particular, voting records can offer various insights about relationships between people of note in that historical context, such as alliances that can form and dissolve over time and people with unusual behavior. In this paper, we present a toolset developed to aid users in exploring relationships in voting records from a particular domain of constitutional conventions. The toolset consists of two elements: a dataset visualizer, which shows the entire timeline of a convention and allows users to investigate relationships at different moments in time via dimensionality reduction, and a person visualizer, which shows details of a given person's activity in that convention to aid in understanding the behavior observed in the dataset visualizer. We discuss our design choices and how each tool in those elements works towards our goals, and how they were perceived in an evaluation conducted with domain experts.Item Tac-Anticipator: Visual Analytics of Anticipation Behaviors in Table Tennis Matches(The Eurographics Association and John Wiley & Sons Ltd., 2023) Wang, Jiachen; Wu, Yihong; Zhang, Xiaolong; Zeng, Yixin; Zhou, Zheng; Zhang, Hui; Xie, Xiao; Wu, Yingcai; Bujack, Roxana; Archambault, Daniel; Schreck, TobiasAnticipation skill is important for elite racquet sports players. Successful anticipation allows them to predict the actions of the opponent better and take early actions in matches. Existing studies of anticipation behaviors, largely based on the analysis of in-lab behaviors, failed to capture the characteristics of in-situ anticipation behaviors in real matches. This research proposes a data-driven approach for research on anticipation behaviors to gain more accurate and reliable insight into anticipation skills. Collaborating with domain experts in table tennis, we develop a complete solution that includes data collection, the development of a model to evaluate anticipation behaviors, and the design of a visual analytics system called Tac-Anticipator. Our case study reveals the strengths and weaknesses of top table tennis players' anticipation behaviors. In a word, our work enriches the research methods and guidelines for visual analytics of anticipation behaviors.